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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_14481068_14483350_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14481068 - 14483350
Intron Length:
2283

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGTGGA
5'SS Class:
strong_major
3'SS Sequence:
TTATTTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAA
U12 Branch Point Sequence:
TTTTCTTTTATT
Flanking Amino Acid:
CEIRAPGYDSDAVDGRWSCW
Intron Amino Acid Position:
567

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
0.9
70.2
35.9
Major BPS
79
0.72
1
80.3
31.7
Major PPT
89.5
0.89
0.7
85.1
29.3
Minor 5ss
32.7
-2
3.1
40.4
45.8
Minor BPS
75.6
0.89
1.5
91.64
31.3

Associated Gene:

Gene:
C6
Ensembl Gene ID:
ENSAPLG00000009882
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010327
14473200 - 14500336
27137
ENSAPLT00000022676
14471638 - 14498961
27324
ENSAPLT00000022345
14471638 - 14500336
28699