About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_14484042_14484987_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14484042 - 14484987
Intron Length:
946

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGACTGTG
5'SS Class:
major
3'SS Sequence:
AATCTCCTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
TTTTTCTGACAG
Flanking Amino Acid:
IANKMTVKHEGSILQSAEQS
Intron Amino Acid Position:
436

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1.1
72.2
39.5
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
78.6
0.64
0.9
74.4
35.4
Minor 5ss
36.4
-1.5
3.3
48.7
47.5
Minor BPS
51.4
-0
1.9
65.14
42.5

Associated Gene:

Gene:
C6
Ensembl Gene ID:
ENSAPLG00000009882
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022676
14471638 - 14498961
27324
ENSAPLT00000022345
14471638 - 14500336
28699
ENSAPLT00000010327
14473200 - 14500336
27137