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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_14492953_14493893_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14492953 - 14493893
Intron Length:
941

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGCCAG
5'SS Class:
major
3'SS Sequence:
TTTTGTTTTTAAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTGT
U12 Branch Point Sequence:
TTTGTTTTTAAG
Flanking Amino Acid:
SIPSVQLIGNGFHILSGESR
Intron Amino Acid Position:
201

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1.1
59.7
46.7
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
82.1
0.72
1
86.9
31.1
Minor 5ss
36.8
-1.5
3
39.3
46
Minor BPS
48.1
-0.2
1.9
59.36
42.7

Associated Gene:

Gene:
C6
Ensembl Gene ID:
ENSAPLG00000009882
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022676
14471638 - 14498961
27324
ENSAPLT00000022345
14471638 - 14500336
28699
ENSAPLT00000010327
14473200 - 14500336
27137