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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_14534790_14565383_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14534790 - 14565383
Intron Length:
30594

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTCC
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCTCCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
TTATGAGTAATT
Flanking Amino Acid:
ASGLRETITERALPAMMQWV
Intron Amino Acid Position:
271

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.8
1.08
0.7
84.9
25.9
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
79.1
0.66
0.7
78
30.8
Minor 5ss
41.5
-0.9
2.7
53.7
43.5
Minor BPS
46.3
-0.2
2.5
73.75
43.3

Associated Gene:

Gene:
PLCXD3
Ensembl Gene ID:
ENSAPLG00000010248
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010667
14534633 - 14619916
85284