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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_14563907_14565383_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14563907 - 14565383
Intron Length:
1477

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTCC
5'SS Class:
strong_major
3'SS Sequence:
GTGCCTGTACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTAAT
U12 Branch Point Sequence:
TGTGCCTGTACC
Flanking Amino Acid:
ASGLRETITERNVYWEHGSL
Intron Amino Acid Position:
271

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.8
1.08
0.7
84.9
25.9
Major BPS
79.3
0.73
1.1
77.9
34.9
Major PPT
63
0.29
1.1
54.7
44.6
Minor 5ss
41.5
-0.9
2.7
53.7
43.5
Minor BPS
53.5
0.09
1.9
68.52
42.7

Associated Gene:

Gene:
PLCXD3
Ensembl Gene ID:
ENSAPLG00000010248
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022762
14563831 - 14619916
56086