Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_14697235_14710683_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

14697235 - 14710683

Intron Length:

13449

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCT|GTAAGTAGA

5'SS Class:

major

3'SS Sequence:

AATCTCGTTTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTTAAA

U12 Branch Point Sequence:

TTCTATTTAAAA

Flanking Amino Acid:

YGDLANWMIPGKMVKGMGGA

Intron Amino Acid Position:

417

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.1

0.59

1.1

71.3

40.3

Major BPS

81.6

0.78

0.8

24.9

Major PPT

70.2

0.46

0.9

66.7

39.6

Minor 5ss

-1.4

2.8

52.3

44.3

Minor BPS

63.9

0.43

1.6

73.42

38.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000010383

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033228

14679340 - 14765208

85869

ENSAPLT00000028200

14679340 - 14755000

75661

ENSAPLT00000010885

14694657 - 14765186

70530