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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_14711595_14714996_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14711595 - 14714996
Intron Length:
3402

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAATCT
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
ATTTCTTTTACA
Flanking Amino Acid:
SEVDPDLINAGKETVTVLPG
Intron Amino Acid Position:
367

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
77.5
31.3
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
89.6
0.89
0.7
84.2
30
Minor 5ss
39.9
-1.1
3.2
57.4
46.8
Minor BPS
73
0.72
1.5
81.53
33.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010383
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028200
14679340 - 14755000
75661
ENSAPLT00000010885
14694657 - 14765186
70530
ENSAPLT00000033228
14679340 - 14765208
85869