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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_14716231_14718944_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14716231 - 14718944
Intron Length:
2714

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
GTTTGTTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
ATATGGTTATTT
Flanking Amino Acid:
QGEKFEKRIERLSIRKPEDS
Intron Amino Acid Position:
282

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
79
35.3
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
86.2
0.81
0.8
80.6
37
Minor 5ss
37.8
-1.4
2.7
46.1
36
Minor BPS
44.3
-0.3
2.5
66.75
44.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010383
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028200
14679340 - 14755000
75661
ENSAPLT00000010885
14694657 - 14765186
70530
ENSAPLT00000033228
14679340 - 14765208
85869