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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_14719053_14738835_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14719053 - 14738835
Intron Length:
19783

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTGTTTGTAAAT
Flanking Amino Acid:
CKAAKTTVVEVEEIVDIGAF
Intron Amino Acid Position:
246

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.9
81.8
38.5
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
88.5
0.87
0.6
85
22.5
Minor 5ss
36.1
-1.6
3.1
51.1
45.4
Minor BPS
52.9
0.17
2.1
76.07
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010383
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033228
14679340 - 14765208
85869
ENSAPLT00000028200
14679340 - 14755000
75661
ENSAPLT00000010885
14694657 - 14765186
70530