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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_14738897_14742958_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14738897 - 14742958
Intron Length:
4062

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGACTT
5'SS Class:
strong_major
3'SS Sequence:
TGTTCTTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
ATTTACTCATTT
Flanking Amino Acid:
KADRAGNIIFRKTARNFNQP
Intron Amino Acid Position:
225

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
75.7
40.3
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
85.1
0.79
0.7
81.1
30.9
Minor 5ss
36.8
-1.5
3.5
56.6
47.5
Minor BPS
51.7
0.13
2
75.92
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010383
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033228
14679340 - 14765208
85869
ENSAPLT00000028200
14679340 - 14755000
75661
ENSAPLT00000010885
14694657 - 14765186
70530