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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_14777246_14777631_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14777246 - 14777631
Intron Length:
386

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTGAGTACT
5'SS Class:
strong_major
3'SS Sequence:
GATTTTATTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTGCTTAGCA
Flanking Amino Acid:
LVTECSINEDPINILGTELV
Intron Amino Acid Position:
125

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
82.6
29.4
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
79.7
0.67
0.9
70.6
44.1
Minor 5ss
35.4
-1.7
2.9
48.5
40.3
Minor BPS
67.6
0.55
2
83.37
37.6

Associated Gene:

Gene:
C5orf51
Ensembl Gene ID:
ENSAPLG00000011429
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022551
14764587 - 14779718
15132
ENSAPLT00000011898
14776197 - 14780191
3995