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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_14778084_14779431_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14778084 - 14779431
Intron Length:
1348

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACAAA
5'SS Class:
strong_major
3'SS Sequence:
ATTATTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTGAA
U12 Branch Point Sequence:
TTGATCTGAATT
Flanking Amino Acid:
DKDTARLLSEGIFSDTHLLA
Intron Amino Acid Position:
207

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
76.5
34.2
Major BPS
73.3
0.58
0.9
63.4
35.6
Major PPT
83.5
0.75
0.8
77.9
35.7
Minor 5ss
38
-1.3
3
48.1
47.6
Minor BPS
62.9
0.48
1.5
77.16
39.6

Associated Gene:

Gene:
C5orf51
Ensembl Gene ID:
ENSAPLG00000011429
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022551
14764587 - 14779718
15132
ENSAPLT00000011898
14776197 - 14780191
3995
Gene:
FBXO4
Ensembl Gene ID:
ENSAPLG00000023011
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038343
14777969 - 14787445
9477