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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_14780412_14782013_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14780412 - 14782013
Intron Length:
1602

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
GTCTATTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
TTACGTTTAATT
Flanking Amino Acid:
SDNTLYDYMAIYKKSCPQSR
Intron Amino Acid Position:
72

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
1
77
33.2
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
82.2
0.72
0.9
75.7
37.9
Minor 5ss
36.4
-1.5
3.2
49.6
39.8
Minor BPS
61.4
0.44
1.7
77.99
38.7

Associated Gene:

Gene:
FBXO4
Ensembl Gene ID:
ENSAPLG00000023011
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024959
14778196 - 14786818
8623
ENSAPLT00000011920
14780197 - 14787445
7249
ENSAPLT00000038343
14777969 - 14787445
9477
ENSAPLT00000029033
14779922 - 14787445
7524