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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_14782235_14783082_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14782235 - 14783082
Intron Length:
848

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAACGATG
5'SS Class:
major
3'SS Sequence:
TTTTCCCATGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
GTATTTGTAACC
Flanking Amino Acid:
VAGLPQRRIHGIGSGVSFQF
Intron Amino Acid Position:
146

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.8
0.47
1.2
66.1
45
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
79
0.65
0.8
75
29.1
Minor 5ss
41.6
-0.9
3.2
54
44.5
Minor BPS
54.3
0.11
2
67.16
38.6

Associated Gene:

Gene:
FBXO4
Ensembl Gene ID:
ENSAPLG00000023011
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038343
14777969 - 14787445
9477
ENSAPLT00000029033
14779922 - 14787445
7524
ENSAPLT00000024959
14778196 - 14786818
8623
ENSAPLT00000011920
14780197 - 14787445
7249