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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_14783159_14783652_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14783159 - 14783652
Intron Length:
494

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATTT
5'SS Class:
strong_major
3'SS Sequence:
TAATACCTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
AATATTTTAATA
Flanking Amino Acid:
FNILTLYSTTSVERKRAREE
Intron Amino Acid Position:
171

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.2
1.04
0.7
90.6
21.2
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
74.2
0.55
0.9
66.8
39.7
Minor 5ss
43.9
-0.7
3.2
64.8
46.5
Minor BPS
64
0.44
1.2
67.09
33

Associated Gene:

Gene:
FBXO4
Ensembl Gene ID:
ENSAPLG00000023011
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024959
14778196 - 14786818
8623
ENSAPLT00000011920
14780197 - 14787445
7249
ENSAPLT00000038343
14777969 - 14787445
9477
ENSAPLT00000029033
14779922 - 14787445
7524