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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_14783832_14784746_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14783832 - 14784746
Intron Length:
915

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGGTTT
5'SS Class:
strong_major
3'SS Sequence:
AATTGTTTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
TAATACTTACAA
Flanking Amino Acid:
IYVANAEAHKKHDRQEELAH
Intron Amino Acid Position:
231

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
82.3
31.4
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
70.8
0.47
0.9
62.5
43.4
Minor 5ss
44.4
-0.6
3.4
64.7
41
Minor BPS
50.4
0.01
1.9
64.23
41.2

Associated Gene:

Gene:
FBXO4
Ensembl Gene ID:
ENSAPLG00000023011
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011920
14780197 - 14787445
7249
ENSAPLT00000038343
14777969 - 14787445
9477
ENSAPLT00000029033
14779922 - 14787445
7524
ENSAPLT00000024959
14778196 - 14786818
8623