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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_14784923_14785778_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14784923 - 14785778
Intron Length:
856

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTACTTGCT
5'SS Class:
major
3'SS Sequence:
TTTATTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
AATACATTAACT
Flanking Amino Acid:
QLNLLNQPWMVQDTVAATLT
Intron Amino Acid Position:
290

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.7
0.44
1.1
64.5
39.6
Major BPS
100
1.24
0.5
100
0
Major PPT
92.4
0.95
0.7
87.7
29.7
Minor 5ss
34.5
-1.8
3.4
47.8
43
Minor BPS
68.4
0.66
1.6
82.42
37.8

Associated Gene:

Gene:
FBXO4
Ensembl Gene ID:
ENSAPLG00000023011
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038343
14777969 - 14787445
9477
ENSAPLT00000029033
14779922 - 14787445
7524
ENSAPLT00000024959
14778196 - 14786818
8623
ENSAPLT00000011920
14780197 - 14787445
7249