Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_14785852_14786316_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

14785852 - 14786316

Intron Length:

465

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATT|GTAAAAATA

5'SS Class:

major

3'SS Sequence:

TTTTTTTCTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCAGAA

U12 Branch Point Sequence:

AAGTGTAGATTT

Flanking Amino Acid:

GIEWLLEEAD*

Intron Amino Acid Position:

314

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

64.8

0.35

1.1

68.8

35.3

Major BPS

64.9

0.37

37.5

Major PPT

1.06

0.5

96.7

11.4

Minor 5ss

-1.2

3.2

54.9

43.5

Minor BPS

36.6

-0.9

48.97

38.4

Associated Gene:

Gene:

FBXO4

Ensembl Gene ID:

ENSAPLG00000023011

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011920

14780197 - 14787445

7249