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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_14900758_14940787_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
14900758 - 14940787
Intron Length:
40030

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGGAC
5'SS Class:
strong_major
3'SS Sequence:
GGAGGGCGACGAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATGGCAG
U12 Branch Point Sequence:
GCCGCGGCCATG
Flanking Amino Acid:
MTSRRSRRRRRRRRR
Intron Amino Acid Position:
6

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
76.5
32.8
Major BPS
41
-0.5
1.7
48.8
46.3
Major PPT
37.5
-0.7
1.6
21
36.8
Minor 5ss
29.5
-2.3
3.5
40.1
46.3
Minor BPS
25.4
-2
2.4
22.73
37

Associated Gene:

Gene:
GHR
Ensembl Gene ID:
ENSAPLG00000011650
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030399
14900426 - 15080922
180497