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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_14940860_15011031_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14940860 - 15011031
Intron Length:
70172

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
TTTATTATTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTGTCCTTTATT
Flanking Amino Acid:
LRAGGGGGAAKIRVMDLRHL
Intron Amino Acid Position:
30

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
0.9
74.2
36.1
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
86.7
0.83
0.8
81.1
35.1
Minor 5ss
33.1
-1.9
3
43
37.7
Minor BPS
74.6
0.86
1.6
87.87
37.8

Associated Gene:

Gene:
GHR
Ensembl Gene ID:
ENSAPLG00000011650
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030399
14900426 - 15080922
180497