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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_1500022_1504376_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1500022 - 1504376
Intron Length:
4355

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGGAC
5'SS Class:
strong_major
3'SS Sequence:
TTAATTATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
ATTTAATTATTT
Flanking Amino Acid:
PKKNNVMARTRLVVPNKGYS
Intron Amino Acid Position:
88

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
69.8
34.7
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
80.9
0.7
0.9
78.3
39.5
Minor 5ss
28.9
-2.4
3.6
40.1
46.3
Minor BPS
51.9
0.14
2
76.83
39.5

Associated Gene:

Gene:
FAM219A
Ensembl Gene ID:
ENSAPLG00000002655
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002679
1411146 - 1506152
95007