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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_15065745_15068187_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15065745 - 15068187
Intron Length:
2443

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATACTG
5'SS Class:
major
3'SS Sequence:
GTTGTCATTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
GTATCTTATACT
Flanking Amino Acid:
PGTIQLLYMKRNDEDWKECP
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
68.3
42.6
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
72.5
0.51
0.9
63.5
42.8
Minor 5ss
35.6
-1.6
3.2
48
47.5
Minor BPS
52.5
0.16
2
73.34
43.3

Associated Gene:

Gene:
GHR
Ensembl Gene ID:
ENSAPLG00000011650
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012220
14940788 - 15080922
140135
ENSAPLT00000039665
14946795 - 15080922
134128
ENSAPLT00000030399
14900426 - 15080922
180497
ENSAPLT00000030169
14971871 - 15080922
109052
ENSAPLT00000017331
14958921 - 15080922
122002