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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_15077000_15079616_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15077000 - 15079616
Intron Length:
2617

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGATC
5'SS Class:
strong_major
3'SS Sequence:
TTATTTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
TGTAAATTAAAA
Flanking Amino Acid:
VILILLSKQPRLKMLIFPPV
Intron Amino Acid Position:
268

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
1
77
35.1
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
91.3
0.93
0.7
84.8
35.6
Minor 5ss
35.4
-1.7
3.5
50.7
46.2
Minor BPS
49.2
-0
1.9
65.31
39.7

Associated Gene:

Gene:
GHR
Ensembl Gene ID:
ENSAPLG00000011650
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030169
14971871 - 15080922
109052
ENSAPLT00000017331
14958921 - 15080922
122002
ENSAPLT00000012220
14940788 - 15080922
140135
ENSAPLT00000039665
14946795 - 15080922
134128
ENSAPLT00000030399
14900426 - 15080922
180497