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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_15121232_15123052_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15121232 - 15123052
Intron Length:
1821

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTATTTTCT
5'SS Class:
major
3'SS Sequence:
TTATGTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
TTTGTATAAACT
Flanking Amino Acid:
ENKCGNCSYTEPDIDATCEN
Intron Amino Acid Position:
169

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.6
0.46
1.1
67.3
38.5
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
85.8
0.81
0.8
80.8
36.6
Minor 5ss
49.5
-0
2.4
68.7
41.9
Minor BPS
55
0.24
2
80.31
41.8

Associated Gene:

Gene:
SELENOP
Ensembl Gene ID:
ENSAPLG00000028990
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028661
15120695 - 15127205
6511