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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_15123171_15124943_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15123171 - 15124943
Intron Length:
1773

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCTGTGTT
5'SS Class:
major
3'SS Sequence:
TTTCTCTTCTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTGCAT
U12 Branch Point Sequence:
GCATACGTAACT
Flanking Amino Acid:
GNKDDFLIYDRCGRLVYHLG
Intron Amino Acid Position:
129

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.4
0.6
1.3
77.9
36.9
Major BPS
62.4
0.31
1.4
73.6
41.8
Major PPT
85
0.79
0.6
84.9
22.7
Minor 5ss
40.1
-1.1
3.2
58.3
46.3
Minor BPS
50.3
0.09
2.2
70.67
45.6

Associated Gene:

Gene:
SELENOP
Ensembl Gene ID:
ENSAPLG00000028990
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028661
15120695 - 15127205
6511