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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_15143405_15148975_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15143405 - 15148975
Intron Length:
5571

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGACGG
5'SS Class:
strong_major
3'SS Sequence:
ACATCTCTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
GTGTTATTATTC
Flanking Amino Acid:
SVRLVPVGMETSPSAMEAEE
Intron Amino Acid Position:
28

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.77
0.9
62.5
43.9
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
76.5
0.6
0.9
69.8
35.7
Minor 5ss
25.9
-2.8
2.9
30.2
42.8
Minor BPS
48.6
-0.1
1.8
59.6
39.9

Associated Gene:

Gene:
ZNF131
Ensembl Gene ID:
ENSAPLG00000026432
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016133
15143324 - 15163639
20316