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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_15156259_15160440_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15156259 - 15160440
Intron Length:
4182

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGCG
5'SS Class:
strong_major
3'SS Sequence:
TCTGTCTTAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TCTGTCTTAATA
Flanking Amino Acid:
HFKEHLRKHTGEKPFECPNC
Intron Amino Acid Position:
352

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.1
0.92
0.8
72.5
37.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
73.4
0.53
0.9
69.8
35.4
Minor 5ss
30.7
-2.2
3.3
39.2
46.2
Minor BPS
70.7
0.65
1.3
74.1
38.6

Associated Gene:

Gene:
ZNF131
Ensembl Gene ID:
ENSAPLG00000026432
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016133
15143324 - 15163639
20316
ENSAPLT00000039152
15148058 - 15164681
16624
ENSAPLT00000028939
15148048 - 15164681
16634
ENSAPLT00000022863
15146714 - 15164681
17968
ENSAPLT00000021689
15148048 - 15163639
15592
ENSAPLT00000043880
15146714 - 15164681
17968