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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_1517540_1517983_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1517540 - 1517983
Intron Length:
444

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCACAA
5'SS Class:
major
3'SS Sequence:
CTTCACATTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
GTCACCTTCACA
Flanking Amino Acid:
PEKYWLTRPEEKYNPVFVNE
Intron Amino Acid Position:
96

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.9
0.4
1.2
58.9
42
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
77.1
0.61
0.9
70.1
34.7
Minor 5ss
35.7
-1.6
3.3
47.8
47.6
Minor BPS
60
0.31
1.8
68.83
43.3

Associated Gene:

Gene:
C9orf24
Ensembl Gene ID:
ENSAPLG00000007506
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007780
1516546 - 1519930
3385