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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_1518097_1518210_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1518097 - 1518210
Intron Length:
114

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGCCT
5'SS Class:
major
3'SS Sequence:
TCACTCCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTGAT
U12 Branch Point Sequence:
CTGTGATCACTC
Flanking Amino Acid:
YSTYLPLPPKEKRMENYLRS
Intron Amino Acid Position:
134

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
67
44.2
Major BPS
68.9
0.47
1.2
60.7
45.9
Major PPT
76.3
0.59
0.8
69.9
30.7
Minor 5ss
32
-2.1
3.6
47.9
47.8
Minor BPS
38.3
-0.9
2.2
46.96
42.9

Associated Gene:

Gene:
C9orf24
Ensembl Gene ID:
ENSAPLG00000007506
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007780
1516546 - 1519930
3385