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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_15185362_15199835_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15185362 - 15199835
Intron Length:
14474

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAACACT
5'SS Class:
major
3'SS Sequence:
ATTCATTCTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTATTTTGATT
Flanking Amino Acid:
EVVHPGIVHEPASLSLCLGN
Intron Amino Acid Position:
493

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
73.8
36.6
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
81.2
0.7
0.8
78
35.5
Minor 5ss
35.9
-1.6
3
49.5
46.5
Minor BPS
68.2
0.65
1.2
82.69
32.4

Associated Gene:

Gene:
HMGCS1
Ensembl Gene ID:
ENSAPLG00000000587
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000985
15185308 - 15204542
19235