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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_1518825_1519775_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
1518825 - 1519775
Intron Length:
951

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGGATG
5'SS Class:
strong_major
3'SS Sequence:
GTATCTCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TGGAGTTTCATC
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
0.9
75.1
40.7
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
71.6
0.49
0.9
62.5
39.5
Minor 5ss
42
-0.9
3.1
56.4
48
Minor BPS
42.9
-0.5
2.1
50.92
40.8

Associated Gene:

Gene:
C9orf24
Ensembl Gene ID:
ENSAPLG00000007506
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007780
1516546 - 1519930
3385