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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_15199433_15199835_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15199433 - 15199835
Intron Length:
403

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAACACT
5'SS Class:
major
3'SS Sequence:
CCCTTCTTCTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
CTGTATTTAATG
Flanking Amino Acid:
EVVHPGIVHEHIPSPAKKVP
Intron Amino Acid Position:
493

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
73.8
36.6
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
77
0.61
0.7
76
26.1
Minor 5ss
35.9
-1.6
3
49.5
46.5
Minor BPS
58.1
0.12
1.6
59.52
43.1

Associated Gene:

Gene:
HMGCS1
Ensembl Gene ID:
ENSAPLG00000000587
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035794
15199326 - 15206321
6996