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Intron Name: Anas_platyrhynchos_platyrhynchos_Z_15200648_15200990_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

15200648 - 15200990

Intron Length:

343

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTGAGTGAA

5'SS Class:

strong_major

3'SS Sequence:

GTTTCTGTTGTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ACATGAT

U12 Branch Point Sequence:

TGGTACATGATG

Flanking Amino Acid:

SIRVTQDATPGSALDKITAS

Intron Amino Acid Position:

396

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.2

0.81

0.9

75.5

28.7

Major BPS

63.3

0.33

1.1

53.7

41.6

Major PPT

78.4

0.64

0.9

73.4

37.1

Minor 5ss

26.7

-2.7

27.8

37.9

Minor BPS

46.8

-0.4

1.9

53.19

41.7

Associated Gene:

Gene:

HMGCS1

Ensembl Gene ID:

ENSAPLG00000000587

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035794

15199326 - 15206321

6996

ENSAPLT00000000985

15185308 - 15204542

19235