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Intron Name: Anas_platyrhynchos_platyrhynchos_Z_15201982_15202112_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

15201982 - 15202112

Intron Length:

131

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGAACA

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTGTAATAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TACTTAT

U12 Branch Point Sequence:

TTTTTTGTAATA

Flanking Amino Acid:

SGIFSGLEAFRDIKLEDTYF

Intron Amino Acid Position:

303

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.9

0.89

0.8

79.5

28.2

Major BPS

83.6

0.84

0.8

71.9

35.8

Major PPT

79.7

0.67

0.9

77.6

35.5

Minor 5ss

28.3

-2.5

2.7

32.3

41.9

Minor BPS

62.4

0.39

33.3

Associated Gene:

Gene:

HMGCS1

Ensembl Gene ID:

ENSAPLG00000000587

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035794

15199326 - 15206321

6996

ENSAPLT00000000985

15185308 - 15204542

19235