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Intron Name: Anas_platyrhynchos_platyrhynchos_Z_15203765_15204094_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

15203765 - 15204094

Intron Length:

330

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGTTCA

5'SS Class:

strong_major

3'SS Sequence:

GGTGTTTTTACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCACAT

U12 Branch Point Sequence:

TCTTGGCTAATT

Flanking Amino Acid:

VNWIESSSWDGRYALVVAGD

Intron Amino Acid Position:

150

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.5

0.91

0.8

79.4

29.6

Major BPS

77.7

0.69

83.3

27.7

Major PPT

79.2

0.66

72.2

42.7

Minor 5ss

40.6

-1

2.7

47.5

42.3

Minor BPS

45.4

-0.2

2.6

71.93

45.5

Associated Gene:

Gene:

HMGCS1

Ensembl Gene ID:

ENSAPLG00000000587

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035794

15199326 - 15206321

6996

ENSAPLT00000000985

15185308 - 15204542

19235