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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_15214729_15215542_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15214729 - 15215542
Intron Length:
814

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TCTGCTCTGGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
TTTTCTTTGATG
Flanking Amino Acid:
ADGLCHLEAVILYIGDRKFC
Intron Amino Acid Position:
56

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
82.8
29.1
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
73
0.52
1
69.1
37
Minor 5ss
37.6
-1.4
3.1
54.1
43
Minor BPS
76.5
0.69
1.2
78.01
33.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027336
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043541
15214572 - 15215709
1138