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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_15243658_15244703_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
15243658 - 15244703
Intron Length:
1046

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTTGT
5'SS Class:
strong_major
3'SS Sequence:
CTGACATTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAA
U12 Branch Point Sequence:
TTTTCTTCAATA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.9
0.9
80.5
35
Major BPS
78.2
0.7
1
79.9
32.6
Major PPT
73
0.52
1
65.7
39.8
Minor 5ss
48
-0.2
2.5
67.3
43.8
Minor BPS
74.6
0.77
1.4
83.43
30.9

Associated Gene:

Gene:
TMEM267
Ensembl Gene ID:
ENSAPLG00000023166
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041022
15241928 - 15245924
3997
ENSAPLT00000040460
15237455 - 15245924
8470