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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_15250353_15251127_R

Intron Information:

Intron Rank:
12
Intron Class:
minor
Intron Phase:
1
Intron Coordinates:
15250353 - 15251127
Intron Length:
775

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTATCCTTT
5'SS Class:
strong_minor
3'SS Sequence:
AAACTCATGCTAG|A
3'SS Class:
strong_BPS
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
TTTTTCTTGACA
Flanking Amino Acid:
AELEKIQRFNYILDNSNVPQ
Intron Amino Acid Position:
572

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
49.8
-0
1.3
55.7
43.9
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
52.9
0.07
1
45
41.3
Minor 5ss
100
1.68
0.4
100
0
Minor BPS
85.2
1.1
0.9
90.04
24.3

Associated Gene:

Gene:
C5orf34
Ensembl Gene ID:
ENSAPLG00000001554
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001582
15249711 - 15262822
13112