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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_15251169_15251955_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15251169 - 15251955
Intron Length:
787

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTACTCATT
5'SS Class:
major
3'SS Sequence:
TTTTCTTGGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTTTCTTGGACA
Flanking Amino Acid:
HTAHSVTEENWSADAELEKI
Intron Amino Acid Position:
558

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.3
0.36
1.1
67.5
43.3
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
77.7
0.62
1
76
38
Minor 5ss
44.5
-0.6
3.2
63.4
43
Minor BPS
72.7
0.71
1.4
83.14
30.7

Associated Gene:

Gene:
C5orf34
Ensembl Gene ID:
ENSAPLG00000001554
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001582
15249711 - 15262822
13112