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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_15252049_15252798_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15252049 - 15252798
Intron Length:
750

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATAAGTA
5'SS Class:
major
3'SS Sequence:
TTCATGTTAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTCATGTTAACA
Flanking Amino Acid:
IKISHPGIYERYITTVIEWC
Intron Amino Acid Position:
527

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75
0.59
1
70.2
33.8
Major BPS
100
1.24
0.5
100
0
Major PPT
73.8
0.54
1
69
40.7
Minor 5ss
39.4
-1.2
3.5
55.5
48.7
Minor BPS
56.8
0.21
2.1
71.25
41.2

Associated Gene:

Gene:
C5orf34
Ensembl Gene ID:
ENSAPLG00000001554
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001582
15249711 - 15262822
13112