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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_15252888_15253919_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15252888 - 15253919
Intron Length:
1032

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTTAT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCTTCTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TTAATACTAATT
Flanking Amino Acid:
DFSSGCRKIQVNENVGWCKL
Intron Amino Acid Position:
498

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
1.1
84
30.2
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
74.4
0.55
1
79.1
26.8
Minor 5ss
47.4
-0.3
2.7
66.9
44.4
Minor BPS
48.6
-0
1.9
71.48
39.1

Associated Gene:

Gene:
C5orf34
Ensembl Gene ID:
ENSAPLG00000001554
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001582
15249711 - 15262822
13112