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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_15255477_15256835_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15255477 - 15256835
Intron Length:
1359

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGTAGG
5'SS Class:
strong_major
3'SS Sequence:
TTATTTCTCTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
GTCTTCTTATTT
Flanking Amino Acid:
EIVWCEGIFYRFIHGKRNIA
Intron Amino Acid Position:
345

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.87
0.9
74.4
41.9
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
81.8
0.72
0.7
81.7
30.1
Minor 5ss
41.2
-1
2.5
51.1
45.4
Minor BPS
63
0.49
1.6
75.8
41.6

Associated Gene:

Gene:
C5orf34
Ensembl Gene ID:
ENSAPLG00000001554
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001582
15249711 - 15262822
13112