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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_15258208_15261339_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15258208 - 15261339
Intron Length:
3132

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGTGTT
5'SS Class:
major
3'SS Sequence:
TTTCTTGTATTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TTTTCTTGTATT
Flanking Amino Acid:
SSFISPERKTILFSDVLEVR
Intron Amino Acid Position:
96

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1.1
78.6
35.6
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
77.3
0.61
0.9
78.3
34.9
Minor 5ss
41.5
-0.9
3.5
68.1
42.7
Minor BPS
62.7
0.48
1.8
84.45
36.2

Associated Gene:

Gene:
C5orf34
Ensembl Gene ID:
ENSAPLG00000001554
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001582
15249711 - 15262822
13112