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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_15268623_15268821_R

Intron Information:

Intron Rank:
10
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
15268623 - 15268821
Intron Length:
199

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTATGTTTT
5'SS Class:
weak_major
3'SS Sequence:
CATTTCCACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
TGGTAATGAAAT
Flanking Amino Acid:
NGTDLPGADYLYKLLFNVEK
Intron Amino Acid Position:
437

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.8
0.47
1.1
73.8
37.3
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
71.7
0.49
0.9
65.7
34.8
Minor 5ss
68
0.61
2.2
85.2
31.6
Minor BPS
46.2
-0.2
2
65.92
43.4

Associated Gene:

Gene:
PAIP1
Ensembl Gene ID:
ENSAPLG00000001947
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032507
15268138 - 15286567
18430