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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_15268916_15269625_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15268916 - 15269625
Intron Length:
710

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACATCAT
5'SS Class:
major
3'SS Sequence:
TTTACTATGCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TCATTTTTACTA
Flanking Amino Acid:
DGIPFTAADPDYQEKYQELL
Intron Amino Acid Position:
345

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.64
1
71.4
40.2
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
73
0.52
1
66.6
43.8
Minor 5ss
34.2
-1.8
3.3
49.6
46.6
Minor BPS
55.4
0.17
1.6
62.67
38.7

Associated Gene:

Gene:
PAIP1
Ensembl Gene ID:
ENSAPLG00000001947
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043449
15266342 - 15287414
21073
ENSAPLT00000032507
15268138 - 15286567
18430
ENSAPLT00000024002
15264219 - 15286567
22349
ENSAPLT00000001986
15264886 - 15288385
23500