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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_15271069_15274647_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15271069 - 15274647
Intron Length:
3579

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGCAG
5'SS Class:
strong_major
3'SS Sequence:
CCCTTGTCTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
GAGTGCTCATCC
Flanking Amino Acid:
NLICAVKLLKLTGSVLEDAW
Intron Amino Acid Position:
252

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.6
41.7
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
74.9
0.56
0.8
72.6
32.2
Minor 5ss
24.7
-2.9
3
28.6
43.8
Minor BPS
44
-0.4
2.1
52.65
44.4

Associated Gene:

Gene:
PAIP1
Ensembl Gene ID:
ENSAPLG00000001947
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032507
15268138 - 15286567
18430
ENSAPLT00000024002
15264219 - 15286567
22349
ENSAPLT00000001986
15264886 - 15288385
23500
ENSAPLT00000043449
15266342 - 15287414
21073