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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_15274774_15276055_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15274774 - 15276055
Intron Length:
1282

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TGATGTTTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TGTTTTTTGATG
Flanking Amino Acid:
FLAELYLNLEIKGTKGQVTR
Intron Amino Acid Position:
210

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
79.2
0.66
1
73.1
41.9
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
64.2
0.3
1.3
66
36.3

Associated Gene:

Gene:
PAIP1
Ensembl Gene ID:
ENSAPLG00000001947
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001986
15264886 - 15288385
23500
ENSAPLT00000043449
15266342 - 15287414
21073
ENSAPLT00000032507
15268138 - 15286567
18430
ENSAPLT00000024002
15264219 - 15286567
22349