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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_15278037_15280257_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
15278037 - 15280257
Intron Length:
2221

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGCCTAT
5'SS Class:
weak_major
3'SS Sequence:
TTTATTTCGGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
ATTATTTTCACT
Flanking Amino Acid:
QELVELIYQQATSVPNFSYM
Intron Amino Acid Position:
135

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.8
0.42
1.2
65.8
42.7
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
68.2
0.41
1.2
72
38.1
Minor 5ss
49.7
-0
3
72.7
44.5
Minor BPS
58.5
0.35
1.8
78.29
38.3

Associated Gene:

Gene:
PAIP1
Ensembl Gene ID:
ENSAPLG00000001947
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043449
15266342 - 15287414
21073
ENSAPLT00000032507
15268138 - 15286567
18430
ENSAPLT00000024002
15264219 - 15286567
22349
ENSAPLT00000001986
15264886 - 15288385
23500