Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_15297801_15298992_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

15297801 - 15298992

Intron Length:

1192

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTAATTGCT

5'SS Class:

major

3'SS Sequence:

TTTCTTTCTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GATTAAT

U12 Branch Point Sequence:

AATTTGGAAACT

Flanking Amino Acid:

EVLASDLVVKVRAPIHNPAL

Intron Amino Acid Position:

128

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.61

74.5

33.9

Major BPS

0.6

1.2

75.9

36.3

Major PPT

93.4

0.98

0.5

92.6

17.4

Minor 5ss

37.1

-1.5

3.3

39.6

Minor BPS

41.9

-0.5

2.7

66.52

44.4

Associated Gene:

Gene:

NNT

Ensembl Gene ID:

ENSAPLG00000002368

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040116

15290545 - 15331400

40856

ENSAPLT00000002474

15290545 - 15329243

38699