Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_15306631_15307066_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

15306631 - 15307066

Intron Length:

436

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGCAAT

5'SS Class:

strong_major

3'SS Sequence:

GCTTTTCTTCTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTTAAA

U12 Branch Point Sequence:

TGTAAAATAATT

Flanking Amino Acid:

TMTSASVYTAGLASMLGLGI

Intron Amino Acid Position:

482

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.1

0.76

77.9

38.6

Major BPS

81.6

0.78

0.8

24.9

Major PPT

81.1

0.7

0.8

73.5

37.1

Minor 5ss

39.7

-1.2

3.2

56.4

Minor BPS

46.4

-0.1

69.4

40.7

Associated Gene:

Gene:

NNT

Ensembl Gene ID:

ENSAPLG00000002368

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040116

15290545 - 15331400

40856

ENSAPLT00000002474

15290545 - 15329243

38699